Systematics, Phylogeny, and Taxonomy (7/11/2000)
Prepared by:
Joseph Malkevitch
Mathematics and Computing Department
York College (CUNY)
Jamaica, New York 11451-0001
Email: malkevitch@york.cuny.edu (for additions, suggestions, and corrections)
Ax, P., The Phlogentic System, John Wiley & Sons, Chichester, 1987.
Bandelt, H., and A. Dress, Reconstructing the shape of a tree from observed dissimilarity
data, Adv. Applied Math., 7 (1986) 309-343.
Bandelt, H., and A. Dress, Split decomposition: a new and useful approach to phylogenetic
analysis of distance data,, Molecular Phylogenetics and Evolution 1 (1992) 242-252.
Buneman, P., A note on metric properties of trees, J. Combinatorial Theory (B), 17
(1974) 48-50.
Dress, A., Trees, tight extensions of metric spaces and the cohomological dimension
of certain groups-a note on the combinatorial properties of metric spaces, Advances
in Math., 53 (1984) 321-402.
Edelberg, M., and M. Garey, R. Graham, On the distance matrix of a tree, Discrete
Math., 14 (1976) 23-29.
Felenstein, J., The number of evolutionary trees, Systematic Zoology, 27 (1978) 27-33.
Fitch, W., Distinguishing homologous from analogous proteins, Systematic Zoology,
19 (1970) 99-113.
Gusfield, D., Algorithms on Strings, Trees, and Sequences, Cambridge U. Press, New
York, 1997.
Hakimi, S. and S. Yau, Distance matrix of a graph and its realizability, Quarterly
of Applied Math., 22 (1964) 305-317.
Hennig, W., Phylogenetic Systematics, (2nd edition), University of Illinois Press,
Urbana, 1979.
Hillis, D. and C. Moritz et al., Second edition, Molecular Systematics, Sinauer Associates,
Sunderland, 1998.
Imrich, W., On metric properties of tree like spaces, in Contributions to Graph Theory
and Its Applications, International Colloquium Oberhof 1977, Technische Hochschule
Ilmenau, Ilmenau, 1977, pp. 129-156.
Lovasz, L. and A. Gyarfas et al., (eds.), Graph Theory and Combinatorial Biology,
Bolyai Society Mathematical Studies, 7, Janos Bolyai Mathematical Society, Budapest,
1999.
Minelli, A., Biological Systematics. The State of the Art, Chapman & Hall, London,
1993.
Miyamoto, M. and J. Cracraft (eds.), Phylogenetic Analysis of DNA Sequences, Oxford
U. Press, New York, 1991.
Nelson, G. and N. Platnick, Systematics and Biogeography: Cladistics and Vicariance,
Columbia U. Press, New York, 1981.
Page, R., and E. Holmes, Molecular Evolution: A Plylogenetic Approach, Blackwell Science,
Oxford, 1998.
Patterson, C. (ed.), Molecules and Morphology in Evolution: Conflict or
Compromise?, Cambridge U. Press, New York, 1987.
Quicke, D., Principles and Techniques of Contemporary Taxonomy, Blackie Academic (Chapman
& Hall), London, 1993.
Sankoff, D., and J. Kruskal, (eds.), Time Warps, String Edits, and Macromolecules:
The Theory and Practice of Sequence Comparison, Addison-Wesley, Reading, 1983.
Simoes-Pereira, J., An optimality criterion for graph embeddings of metrics, SIAM
J. Disc. Math., 1 (1988) 223-229.
Sneath, P. and R. Sokal, Numerical Taxonomy, W. H. Freeman, San Francisco, 1973.
Sokal, R. and P. Sneath, Principles of Numerical Taxonomy, W. H. Freeman, San Francisco,
1963.
Stuessy, T., Plant Taxonomy: The Systematic Evaluation of Comparative Data, Columbia
U. Press, New York, 1990.
Warnow, T., Some combinatorial optimization problems in phylogenetics, in Graph Theory
and Combinatorial Biology, L. Lovasz et al. (eds.), Bolyai Society Mathematical Studies,
Volume 7, Budapest, 1999, 363-413.
Waterman, M., Introduction to Computational Biology, Chapman and Hall, New York, 1995.
Wiley, E., Phylogenetics, John Wiley & Sons, New York, 1981.
Wiley, E. and D. Siegel-Causey, D. Brooks, V. Funk, The Compleat Cladist: A Primer
of Phylogenetic Procedures, Special Publication 19, U. of Kansas Museum of Natural
History, , Lawrence, 1991.
Acknowledgement
This work was prepared with partial support from the National Science Foundation (Grant
Number: DUE 9555401) to the Long Island Consortium for Interconnected Learning (administered
by SUNY at Stony Brook, Alan Tucker, Director).
Back to list of bibliographies